The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0983
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2530918
End posion on genome 2530990
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
gcaatcaagt
tRNA gene sequence 
GCCGCCATAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAATGTCACAGGTTCGAGC
CCTGTTGGCGGCGctc
Downstream region at tRNA end position 
tttaatcctt
Secondary structure (Cloverleaf model)
>At0983	Asn	GTT
                   t      Gctc tttaatcctt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T          C G
                    T     T G T C C     A
      T G A        A      | | | | |     G
    T       C T C A       A C A G G     C
    G       | | | |                 T T
    G       G A G T
      T A          G     ATGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCATAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAATGTCACAGGTTCGAGC
CCTGTTGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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