The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0985
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 113010
End posion on genome 112939
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gaatcaattc
tRNA gene sequence 
ACACCAGTAGTGTAGCGGTTATCACCGGGCGTTGCCAACGCTCGAACTCGGGTTCGATTC
CCGACTGGTGTAtat
Downstream region at tRNA end position 
cttttttttg
Secondary structure (Cloverleaf model)
>At0985	Gly	GCC
                   c      Atat cttttttttg
                     A - T
                     C - G
                     A - T
                     C - G
                     C - G
                     A - T
                     G - C          T T
                    T     A G C C C     A
      C G A        A      | | | | |     G
    G       T G T G       T C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          C     GAAC
                    G - C
                    G + T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
ACACCAGTAGTGTAGCGGTTATCACCGGGCGTTGCCAACGCTCGAACTCGGGTTCGATTC
CCGACTGGTGTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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