The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0989
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 157872
End posion on genome 157795
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
aaaacagcgt
tRNA gene sequence 
GCTCCGGTAGTGTAGTCCGGCCAATCATTCCAGCCTTTCGAGCTGAAAACTCGGGTTCGA
ATCCCGGCCGGAGCACCA
Downstream region at tRNA end position 
aacaatcttt
Secondary structure (Cloverleaf model)
>At0989	Glu	TTC
                   t      ACCA aacaatcttt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      + | | | |     G
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     AAAC
                    C   A
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTAGTGTAGTCCGGCCAATCATTCCAGCCTTTCGAGCTGAAAACTCGGGTTCGA
ATCCCGGCCGGAGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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