The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0991
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 702137
End posion on genome 702053
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
acacaaaatt
tRNA gene sequence 
GCGAGGGTCGCCCAGCCAGGTCAAAGGCGTCAGACTTAAGATCTGATAACGAAGGTTTTC
AAGGGTTCGAATCCCTTCCCTCGCActa
Downstream region at tRNA end position 
aataatttta
Secondary structure (Cloverleaf model)
>At0991	Leu	TAA
                   t      Acta aataatttta
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        C      | | | | |     G
  A         C C C G       A A G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TAACGAAGGTTTTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTCGCCCAGCCAGGTCAAAGGCGTCAGACTTAAGATCTGATAACGAAGGTTTTC
AAGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK