The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0992
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 714645
End posion on genome 714572
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
atttcaatat
tRNA gene sequence 
GGGCTCGTGGTCTAGCTGGTTATGACGTTGCCTTCACACGGCAGAGCTCCGGAGTTCGAA
TCTCCGCGGGCCCAtct
Downstream region at tRNA end position 
ggcatttctg
Secondary structure (Cloverleaf model)
>At0992	Val	CAC
                   t      Atct ggcatttctg
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G C C T C     A
      C G A        G      | | | | |     G
    T       T C T G       C G G A G     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGCTC
                    T + G
                    T - A
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGCTGGTTATGACGTTGCCTTCACACGGCAGAGCTCCGGAGTTCGAA
TCTCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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