The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0996
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1253618
End posion on genome 1253544
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ttcatttaat
tRNA gene sequence 
GGGCTCGTAGTGTAGTGGATATCATTTTAGCCTCCGGAGCTTAGAACCCGGGTTCGATTC
CCGGCGGGCCCGCCA
Downstream region at tRNA end position 
cggactcttt
Secondary structure (Cloverleaf model)
>At0996	Arg	CCG
                   t      GCCA cggactcttt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T T
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G T G       C C G G G     C
    G         | | +                 T T
    A       T C A T
      T A          T     GAAC
                    T - A
                    T   T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGTGTAGTGGATATCATTTTAGCCTCCGGAGCTTAGAACCCGGGTTCGATTC
CCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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