The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0998
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1353932
End posion on genome 1353861
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tgataatgat
tRNA gene sequence 
GCCTCGGTGGCTTAGGGGTATAGCGCGTCCTTGGTAAGGACGAGGTCGCGTGTTCAAATC
ACGCCCGAGGCTttc
Downstream region at tRNA end position 
tatttctagt
Secondary structure (Cloverleaf model)
>At0998	Thr	GGT
                   t      Tttc tatttctagt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C G C A C     A
        G A        G      | | | | |     A
      G     T T C G       G C G T G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGCTTAGGGGTATAGCGCGTCCTTGGTAAGGACGAGGTCGCGTGTTCAAATC
ACGCCCGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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