The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0999
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1415823
End posion on genome 1415751
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
taaacgcaat
tRNA gene sequence 
GTCCGAATAGTGTAGAGGCCTATCATGGAGCCCTGTCGAGGCTCCGACTCGGGTTCGAAT
CCCGGTTCGGGCGtac
Downstream region at tRNA end position 
aatcttaccg
Secondary structure (Cloverleaf model)
>At0999	Asp	GTC
                   t      Gtac aatcttaccg
                     G - C
                     T + G
                     C - G
                     C - G
                     G - C
                     A - T
                     A - T          T A
                    T     G G C C C     A
      A G A        A      + | | | |     G
    G       T G T G       T C G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        G     CGAC
                    G - C
                    A - T
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCGAATAGTGTAGAGGCCTATCATGGAGCCCTGTCGAGGCTCCGACTCGGGTTCGAAT
CCCGGTTCGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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