The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1004
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1810391
End posion on genome 1810317
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
tcgtccccgt
tRNA gene sequence 
GGGGCCGTAGGGTAGCCTGGTCCATCCTGCAAGGCTGGGGGTCTTGCGACTTGAGTTCAA
ATCTCAGCGGCCCCAtca
Downstream region at tRNA end position 
caagatcttg
Secondary structure (Cloverleaf model)
>At1004	Pro	GGG
                   t      Atca caagatcttg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      + | | | |     A
  T         T G G G       T T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        G     CGAC
                    C - G
                    A - T
                    A - T
                    G - C
                    G + T
                  C       G
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCCTGGTCCATCCTGCAAGGCTGGGGGTCTTGCGACTTGAGTTCAA
ATCTCAGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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