The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1005
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2383342
End posion on genome 2383268
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
attcaattgt
tRNA gene sequence 
GGGCCGGTAGATCAGGGGAAGATCGCTACCTTGGCATGGTAGAGGCCTCGGGTTCAATTC
CCGACCGGTCCACCA
Downstream region at tRNA end position 
acctttttta
Secondary structure (Cloverleaf model)
>At1005	Ala	GGC
                   t      ACCA acctttttta
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T T
                    T     A G C C C     A
        G A        A      | | | | |     A
      G     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        A A        G     AGGCC
                    C - G
                    T - A
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGGGGAAGATCGCTACCTTGGCATGGTAGAGGCCTCGGGTTCAATTC
CCGACCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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