The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1006
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2427741
End posion on genome 2427664
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
aaaaccgtgt
tRNA gene sequence 
GCTCCGATAGTGTAGCACGGCCAATCATACAGGACTCTCACTCCTGCGACTGGGGTTCGA
ATCCCCATCGGAGCACCA
Downstream region at tRNA end position 
tacttttgtt
Secondary structure (Cloverleaf model)
>At1006	Glu	CTC
                   t      ACCA tacttttgtt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     A C C C C     A
    A C G A        A      | | | | |     G
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        A     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGATAGTGTAGCACGGCCAATCATACAGGACTCTCACTCCTGCGACTGGGGTTCGA
ATCCCCATCGGAGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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