The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1008
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 281817
End posion on genome 281901
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agtgagtagt
tRNA gene sequence 
GCGGAGATGGCCCAGTCTGGTACGGCGCGGGACTGCTAATCCCGTTGGGCTTTGCCCAAC
CCGAGTTCAAATCTCGGTCTCCGCGttt
Downstream region at tRNA end position 
tatttttaag
Secondary structure (Cloverleaf model)
>At1008	Ser	GCT
                   t      Gttt tatttttaag
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G G C T C     A
      T G A        G      | | | | |     A
    C       C C C G       C C G A G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TTGGGCTTTGCCCAAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATGGCCCAGTCTGGTACGGCGCGGGACTGCTAATCCCGTTGGGCTTTGCCCAAC
CCGAGTTCAAATCTCGGTCTCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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