The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1011
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 841555
End posion on genome 841629
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gattatttat
tRNA gene sequence 
GGGCTCGTGGTTTAGTCTGGATATGATACTGGACTTCGGATCCAGTGATCGGGGGTTCGA
ATCCCTCCGAGCTCGttt
Downstream region at tRNA end position 
tatttttttt
Secondary structure (Cloverleaf model)
>At1011	Arg	TCG
                   t      Gttt tatttttttt
                     G - C
                     G + T
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C T G A        G      | + | | |     G
  T         T T T G       G G G G G     C
  G           + | +                 T T
  G         T G A T
    A T A          A     TGATC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTTTAGTCTGGATATGATACTGGACTTCGGATCCAGTGATCGGGGGTTCGA
ATCCCTCCGAGCTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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