The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1012
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 859952
End posion on genome 860026
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
acagttgatt
tRNA gene sequence 
AGGGCGGTGGCTTAGACTGGTTATAGTGCTCGGCTGATAACCGAGTGGTCCGGGGTTCGA
ATCCCCGCCGCCCTActa
Downstream region at tRNA end position 
tttttttaag
Secondary structure (Cloverleaf model)
>At1012	Ile	GAT
                   t      Acta tttttttaag
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C A G A        G      | | | | |     G
  T         T T C G       C G G G G     C
  G           | | +                 T T
  G         T A G T
    T T A          G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGGCGGTGGCTTAGACTGGTTATAGTGCTCGGCTGATAACCGAGTGGTCCGGGGTTCGA
ATCCCCGCCGCCCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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