The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1015
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1029211
End posion on genome 1029285
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
acattgaagt
tRNA gene sequence 
GGGCCCGTGGCCTAGTCTGGATACGGCACCGGCCTTCTAAGCCGGGGATCGGGGGTTCAA
ATCCCTCTGGGTCCGttc
Downstream region at tRNA end position 
aattaattta
Secondary structure (Cloverleaf model)
>At1015	Arg	TCT
                   t      Gttc aattaattta
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G + T          T A
                    T     C T C C C     A
    C T G A        G      | + | | |     A
  T         T C C G       G G G G G     C
  G           | | |                 T T
  G         C G G C
    A T A          A     GGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCCTAGTCTGGATACGGCACCGGCCTTCTAAGCCGGGGATCGGGGGTTCAA
ATCCCTCTGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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