The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1016
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1029319
End posion on genome 1029393
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tttataatat
tRNA gene sequence 
GCTCCAGTGGTGTAGTCCGGCCAATCATGCAGGCCTTTCGAGCCTGCGACTCGGGTTCAA
ATCCCGGCTGGAGCAttt
Downstream region at tRNA end position 
atttttataa
Secondary structure (Cloverleaf model)
>At1016	Glu	TTC
                   t      Attt atttttataa
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCAGTGGTGTAGTCCGGCCAATCATGCAGGCCTTTCGAGCCTGCGACTCGGGTTCAA
ATCCCGGCTGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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