The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1017
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1053103
End posion on genome 1053176
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aatagaatat
tRNA gene sequence 
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAAGGGTTCAAA
TCCCTTCCTTGGCTttt
Downstream region at tRNA end position 
tcaaataata
Secondary structure (Cloverleaf model)
>At1017	Cys	GCA
                   t      Tttt tcaaataata
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        A      | | | | |     A
    C       T C T G       A A G G G     C
    C       | | + |                 T T
    G       A G G C
      G C G        A     TTCAG
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAAGGGTTCAAA
TCCCTTCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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