The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1020
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1293816
End posion on genome 1293890
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
cataattaat
tRNA gene sequence 
GCTCCAGTGGTGTAGTCCGGCCAATCATGCAGGCCTTTCGAGCCTGCGACTCGGGTTCAA
ATCCCGGCTGGAGCActt
Downstream region at tRNA end position 
tattatattt
Secondary structure (Cloverleaf model)
>At1020	Glu	TTC
                   t      Actt tattatattt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCAGTGGTGTAGTCCGGCCAATCATGCAGGCCTTTCGAGCCTGCGACTCGGGTTCAA
ATCCCGGCTGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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