The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1021
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1293938
End posion on genome 1294022
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
taattggtgt
tRNA gene sequence 
GCAGGGGTTGTCGAGCCTGGCCAAAGACGCAGGACTTAGAATCCTGTCCTATAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCAtta
Downstream region at tRNA end position 
tttatattat
Secondary structure (Cloverleaf model)
>At1021	Leu	TAG
                   t      Atta tttatattat
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
    C C G A        T      | | | | |     A
  T         G C T G       C A G G G     C
  G           | | |                 T T
  G         A G A C
    C C A A        G     TCCTATAGTGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTTGTCGAGCCTGGCCAAAGACGCAGGACTTAGAATCCTGTCCTATAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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