The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1022
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1294050
End posion on genome 1294124
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tattactgtg
tRNA gene sequence 
GCCGGTGTAGGGTAGTGGTTATCCTGAAGGACTGTGGATCCTTCGACCCGGGTTCGATTC
TCGGCACCGGCCCCA
Downstream region at tRNA end position 
ttactttttt
Secondary structure (Cloverleaf model)
>At1022	His	GTG
                   g      CCCA ttactttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C          T T
                    T     G G C T C     A
      T G A        A      | | | + |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    T       T C C T
      T A          G     CGAC
                    A - T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTAGGGTAGTGGTTATCCTGAAGGACTGTGGATCCTTCGACCCGGGTTCGATTC
TCGGCACCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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