The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1024
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 64571
End posion on genome 64495
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gtattattat
tRNA gene sequence 
GAGCTCGTGGTCTAGTTGGCTATGATACCGCCTTGACTCGGCAGTGATCGGGAGTTCAAA
TCTCTCCGAGCTCACCA
Downstream region at tRNA end position 
tttatattta
Secondary structure (Cloverleaf model)
>At1024	Val	GAC
                   t      ACCA tttatattta
                     G - C
                     A - T
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C T C T C     A
      T G A        G      | + | | |     A
    T       T C T G       G G G A G     C
    G         | | +                 T T
    G       T G A T
      C T A        A     TGATC
                    C - G
                    C   A
                    G - C
                    C - G
                    C - G
                  T       C
                  T       T
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GAGCTCGTGGTCTAGTTGGCTATGATACCGCCTTGACTCGGCAGTGATCGGGAGTTCAAA
TCTCTCCGAGCTCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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