The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1025
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 503984
End posion on genome 503911
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
taaaattgtt
tRNA gene sequence 
GCTCCTGTGGGTTAGTTAGGATATGCTTGCGAACTGCGGATTCGCAGACTCGGGTTCAAA
TCCCGGCAGGAGCGttt
Downstream region at tRNA end position 
tttaatattt
Secondary structure (Cloverleaf model)
>At1025	Arg	GCG
                   t      Gttt tttaatattt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
    T T G A        G      + | | | |     A
  A         T T G G       T C G G G     C
  G           + | +                 T T
  G         T G C T
    A T A          T     AGAC
                    G - C
                    C - G
                    G - C
                    A - T
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCTGTGGGTTAGTTAGGATATGCTTGCGAACTGCGGATTCGCAGACTCGGGTTCAAA
TCCCGGCAGGAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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