The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1027
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 846367
End posion on genome 846295
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ggttaacatt
tRNA gene sequence 
GCGCCAGTGGTGTAGTCTGGTATCACTTTGGCCTTCCAAGCCAATAAGCTGGGTTCGAAT
CCCAGCTGGCGCAttt
Downstream region at tRNA end position 
ttttataggg
Secondary structure (Cloverleaf model)
>At1027	Gly	TCC
                   t      Attt ttttataggg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G A C C C     A
      T G A        G      | | | | |     G
    C       T G T G       C T G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TAAG
                    T - A
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGTCTGGTATCACTTTGGCCTTCCAAGCCAATAAGCTGGGTTCGAAT
CCCAGCTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK