The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1028
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 846519
End posion on genome 846447
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
attatatcat
tRNA gene sequence 
GCGCCAGTGGTGTAGTCTGGTATCACTTTGGCCTTCCAAGCCAATAAGCTGGGTTCGAAT
CCCAGCTGGCGCAttt
Downstream region at tRNA end position 
tttatacgat
Secondary structure (Cloverleaf model)
>At1028	Gly	TCC
                   t      Attt tttatacgat
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G A C C C     A
      T G A        G      | | | | |     G
    C       T G T G       C T G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TAAG
                    T - A
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGTCTGGTATCACTTTGGCCTTCCAAGCCAATAAGCTGGGTTCGAAT
CCCAGCTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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