The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1030
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1141997
End posion on genome 1141920
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ttttatatat
tRNA gene sequence 
GGGACTGTGGGGTAGCTTGGTCCATCCTGTGCGTCTGGGGGGCGTGCAACCTGAGTTCGA
ATCTCAGCAGTCCCACCA
Downstream region at tRNA end position 
tttattatgt
Secondary structure (Cloverleaf model)
>At1030	Pro	GGG
                   t      ACCA tttattatgt
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     T - A
                     G - C          T A
                    T     G A C T C     A
    T C G A        G      | | | | |     G
  T         T G G G       C T G A G     C
  G         | + | |                 T T
  G         A T C C
    T C C          T     GCAAC
                    G + T
                    T + G
                    G - C
                    C - G
                    G   G
                  T       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACTGTGGGGTAGCTTGGTCCATCCTGTGCGTCTGGGGGGCGTGCAACCTGAGTTCGA
ATCTCAGCAGTCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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