The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1031
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1146041
End posion on genome 1145957
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ggatagatgg
tRNA gene sequence 
GCAGAGATAGTCTAGCTCGGTAAGGCGTGGGACTGGAAATCCCATGGGGCTTTGCTCCGC
GGGGGTTCAAATCCCCCTCTCTGCGttt
Downstream region at tRNA end position 
tttatttttt
Secondary structure (Cloverleaf model)
>At1031	Ser	GGA
                   g      Gttt tttatttttt
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    T       T C T G       G G G G G     C
    C       | | + |                 T T
    G       A G G C
      G T A        G     TGGGGCTTTGCTCCGC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGATAGTCTAGCTCGGTAAGGCGTGGGACTGGAAATCCCATGGGGCTTTGCTCCGC
GGGGGTTCAAATCCCCCTCTCTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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