The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1032
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1173128
End posion on genome 1173042
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tttaatttgt
tRNA gene sequence 
GCAGAGGTGGTCGAGCTTGGACTATGGCGCCGGACTTGAAATCCGGTGGAGCTTTGCTCC
GCAAGGGTTCAAATCCCTTCCTCTGCGctt
Downstream region at tRNA end position 
tttattttag
Secondary structure (Cloverleaf model)
>At1032	Ser	TGA
                   t      Gctt tttattttag
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
    T C G A        G      | | | | |     A
  T         G C T G       A A G G G     C
  G         + | + |                 T T
  G         T G G C
    A C T A        G     TGGAGCTTTGCTCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTGGTCGAGCTTGGACTATGGCGCCGGACTTGAAATCCGGTGGAGCTTTGCTCC
GCAAGGGTTCAAATCCCTTCCTCTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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