The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1033
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1194583
End posion on genome 1194511
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
taaggacaat
tRNA gene sequence 
GGGCCCGTAGCTCAGTTGGGAGAGCGCCGCCCTTGCAAGGCGGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCAtac
Downstream region at tRNA end position 
ggagttataa
Secondary structure (Cloverleaf model)
>At1033	Ala	TGC
                   t      Atac ggagttataa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      T G A        A      | + | | |     A
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTTGGGAGAGCGCCGCCCTTGCAAGGCGGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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