The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1034
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1293476
End posion on genome 1293403
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gaatagtttt
tRNA gene sequence 
GCCGTGGTAGTTCAGCCTGGGAGAACGCTGGACTGAAGATCCAGTTGTCGGGTGTTCGAA
TCACCCCCACGGCAtat
Downstream region at tRNA end position 
tttttaacct
Secondary structure (Cloverleaf model)
>At1034	Phe	GAA
                   t      Atat tttttaacct
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     C C C A C     A
      C G A        A      | | | | |     G
    C       C T T G       G G G T G     C
    T       | | | |                 T T
    G       G A A C
      G G A        G     TTGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGGTAGTTCAGCCTGGGAGAACGCTGGACTGAAGATCCAGTTGTCGGGTGTTCGAA
TCACCCCCACGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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