The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1035
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1325718
End posion on genome 1325634
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ttatttaaat
tRNA gene sequence 
GCGGGGGTTGCCAAGCCTGGCCAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCCCGCAtat
Downstream region at tRNA end position 
tttcaaatga
Secondary structure (Cloverleaf model)
>At1035	Leu	GAG
                   t      Atat tttcaaatga
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     G
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCTCATAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCAAGCCTGGCCAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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