The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1040
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1378272
End posion on genome 1378197
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
ataccattat
tRNA gene sequence 
CCGGTGGTAGTTCAGTTGGTAGAGCGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAAT
CCGGCCCACCGGACCA
Downstream region at tRNA end position 
ttgggcccgt
Secondary structure (Cloverleaf model)
>At1040	Tyr	GTA
                   t      ACCA ttgggcccgt
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     C G G C C     A
      T G A        A      | | + | |     A
    T       C T T G       G C T G G     C
    G       | | + |                 T T
    G       G A G C
      T A          G     ATGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCGGTGGTAGTTCAGTTGGTAGAGCGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAAT
CCGGCCCACCGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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