The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1041
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1378374
End posion on genome 1378297
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
taaaagcaat
tRNA gene sequence 
GGGCTTGTAGGGTAGCCTGGTCCATCCTTTGGGATTTGGGATCCTGAGACCCCAGTTCGA
ATCTGGGCAAGCCCACCA
Downstream region at tRNA end position 
tttattatta
Secondary structure (Cloverleaf model)
>At1041	Pro	TGG
                   t      ACCA tttattatta
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     G G G T C     A
    C C G A        A      | | | | |     G
  T         T G G G       C C C A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     AGAC
                    T + G
                    G + T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGGGTAGCCTGGTCCATCCTTTGGGATTTGGGATCCTGAGACCCCAGTTCGA
ATCTGGGCAAGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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