The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1042
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1378480
End posion on genome 1378407
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cgaacaaaat
tRNA gene sequence 
GCCTCGGTGGCTCAGCCTGGTAGAGCGCCTGACTTGTAATCAGGTGGTCGGGGGTTCGAA
TCCCCCCCGGGGCTtgg
Downstream region at tRNA end position 
gacatctaaa
Secondary structure (Cloverleaf model)
>At1042	Thr	TGT
                   t      Ttgg gacatctaaa
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGCTCAGCCTGGTAGAGCGCCTGACTTGTAATCAGGTGGTCGGGGGTTCGAA
TCCCCCCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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