The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1043
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1449341
End posion on genome 1449227
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atttgttttc
tRNA gene sequence 
GGGGATATGGTGTAGCCTGGCCTATCATTGGGGACTCCAAATCCCTAGACCTGGGTTCAA
ATCCCAGTATCCCCAtat
Downstream region at tRNA end position 
tatttttttt
Secondary structure (Cloverleaf model)
>At1043	Trp	CCA
                   c      Atat tatttttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T A
                    T     G A C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    C C T A        T     AGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGATATGGTGTAGCCTGGCCTATCATTGGGGACTCCAAgtgcctatatggatttggac
taaaacctaatgcaggagaaATCCCTAGACCTGGGTTCAAATCCCAGTATCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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