The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1044
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1543406
End posion on genome 1543333
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
aatatttatt
tRNA gene sequence 
GCTTTGGTGGCTTAGCTCGGTATAGCGCTTGCTTGGTAAGCAAGAGGTCGCGGGTCCGAA
TCCCGCCCAAAGCTcta
Downstream region at tRNA end position 
tttttttaaa
Secondary structure (Cloverleaf model)
>At1044	Thr	GGT
                   t      Tcta tttttttaaa
                     G - C
                     C - G
                     T - A
                     T - A
                     T - A
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    T       T T C G       G C G G G     C
    C         | | |                 T C
    G       T A G C
      G T A        G     AGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTTTGGTGGCTTAGCTCGGTATAGCGCTTGCTTGGTAAGCAAGAGGTCGCGGGTCCGAA
TCCCGCCCAAAGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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