The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1045
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 18648
End posion on genome 18732
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ggttcattgt
tRNA gene sequence 
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCAtat
Downstream region at tRNA end position 
tttttaaaac
Secondary structure (Cloverleaf model)
>At1045	Leu	GAG
                   t      Atat tttttaaaac
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     G
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    T T A A        G     TCTCATAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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