The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1055
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1672014
End posion on genome 1672177
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aatgtgcatt
tRNA gene sequence 
GGGAGTATGGTGTAGTCTGGTCTATCATCGGGGACTCCAAATCCCTGGACCTGGGTTCAA
ATCCCAGTACTTCCActt
Downstream region at tRNA end position 
tttttctttt
Secondary structure (Cloverleaf model)
>At1055	Trp	CCA
                   t      Actt tttttctttt
                     G - C
                     G - C
                     G + T
                     A - T
                     G - C
                     T - A
                     A - T          T A
                    T     G A C C C     A
    C T G A        G      | | | | |     A
  T         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    T C T A        C     GGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGAGTATGGTGTAGTCTGGTCTATCATCGGGGACTCCAAgtgcctatatggccttctta
agaatctaaggatttttaaggcgcacaaacacaagtttgttgcgcggactaaagcccgat
gcaggagaaATCCCTGGACCTGGGTTCAAATCCCAGTACTTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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