The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1058
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1700176
End posion on genome 1700250
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tctgaaacaa
tRNA gene sequence 
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCAttt
Downstream region at tRNA end position 
atttttaagt
Secondary structure (Cloverleaf model)
>At1058	Glu	TTC
                   a      Attt atttttaagt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        C     GGAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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