The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1062
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 27772
End posion on genome 27698
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
attgtaaatt
tRNA gene sequence 
AGGGCAGTGGCTCAGCCTGGTTAGAGTGCTCGGCTGATAACCGAGTGGCCCGGGGTTCGA
ATCCCCGCTGCCCTActt
Downstream region at tRNA end position 
ctttttattt
Secondary structure (Cloverleaf model)
>At1062	Ile	GAT
                   t      Actt ctttttattt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     G
  T         C T C G       C G G G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     TGGCC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGGCAGTGGCTCAGCCTGGTTAGAGTGCTCGGCTGATAACCGAGTGGCCCGGGGTTCGA
ATCCCCGCTGCCCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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