The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1063
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 230640
End posion on genome 230567
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ctattcagac
tRNA gene sequence 
GGGGCCGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCGGCCCCAttt
Downstream region at tRNA end position 
tttattaatc
Secondary structure (Cloverleaf model)
>At1063	Pro	GGG
                   c      Attt tttattaatc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
      C G A        G      | | | | |     G
    C       T G G G       C C G A G     C
    T       | + | |                 T T
    G       A T C C
      G C C        T     GCAAC
                    G + T
                    T + G
                    G - C
                    C - G
                    G   G
                  T       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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