The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1066
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 619792
End posion on genome 619706
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
acaagtgcga
tRNA gene sequence 
GCAGAGGTGGTTGAGCTTGGCCAAAGGCGCCGGACTTGAAATCCGGTTCTCCACTGGGGA
GCGGGGGTTCAAATCCCTCCCTCTGCGctt
Downstream region at tRNA end position 
cattttgaaa
Secondary structure (Cloverleaf model)
>At1066	Ser	TGA
                   a      Gctt cattttgaaa
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    T C G A        G      | + | | |     A
  T         G T T G       G G G G G     C
  G           + + |                 T T
  G         A G G C
    C C A A        G     TTCTCCACTGGGGAGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTGGTTGAGCTTGGCCAAAGGCGCCGGACTTGAAATCCGGTTCTCCACTGGGGA
GCGGGGGTTCAAATCCCTCCCTCTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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