The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1069
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1279411
End posion on genome 1279335
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gtgattaagt
tRNA gene sequence 
GAGTTCGTGGTCTAGTTGGCTATGATACCGCCCTGACACGGCGGTGATCGGGAGTTCGAA
TCTCCCCGGACTCACCA
Downstream region at tRNA end position 
tttctatttt
Secondary structure (Cloverleaf model)
>At1069	Val	GAC
                   t      ACCA tttctatttt
                     G - C
                     A - T
                     G - C
                     T - A
                     T + G
                     C - G
                     G - C          T A
                    T     C C C T C     A
      T G A        G      | | | | |     G
    T       T C T G       G G G A G     C
    G         | | +                 T T
    G       T G A T
      C T A        A     TGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GAGTTCGTGGTCTAGTTGGCTATGATACCGCCCTGACACGGCGGTGATCGGGAGTTCGAA
TCTCCCCGGACTCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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