The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1072
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1430561
End posion on genome 1430477
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atgactcatt
tRNA gene sequence 
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GAGGGTTCAAATCCCTTTCCCTCCActt
Downstream region at tRNA end position 
tttttaaaat
Secondary structure (Cloverleaf model)
>At1072	Leu	TAA
                   t      Actt tttttaaaat
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     A
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCGGTAGCGGTTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GAGGGTTCAAATCCCTTTCCCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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