The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1078
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1517711
End posion on genome 1517638
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cacttatatt
tRNA gene sequence 
CCCGCGATAGTTCAGACTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGActc
Downstream region at tRNA end position 
acatattctt
Secondary structure (Cloverleaf model)
>At1078	Tyr	GTA
                   t      Actc acatattctt
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     A - T          T A
                    T     C G G C C     A
      A G A        A      | | + | |     A
    C       C T T G       G C T G G     C
    T       | | | |                 T T
    G       G A A C
      G T A        G     ATGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGATAGTTCAGACTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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