The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1082
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 532127
End posion on genome 532201
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aattttggtt
tRNA gene sequence 
GGGCCCGTGGTTTAGCTTGGATAGAATACAGGGCTTCGGACCCTGTGGTCGGGGGTTCAA
ATCCCTCCGGGCTCGtca
Downstream region at tRNA end position 
acatttttaa
Secondary structure (Cloverleaf model)
>At1082	Arg	TCG
                   t      Gtca acatttttaa
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
    T C G A        G      | + | | |     A
  T         T T T G       G G G G G     C
  G         + | | +                 T T
  G         G A A T
    A T A          A     TGGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTTTAGCTTGGATAGAATACAGGGCTTCGGACCCTGTGGTCGGGGGTTCAA
ATCCCTCCGGGCTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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