The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1090
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 1072031
End posion on genome 1072107
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
gtcgtcttat
tRNA gene sequence
GGGCCTGTGGGGTAGCCTGGTCATCCTTTGGGATTTGGGATCCTGAAACCCCAGTTCGAA
TCTGGGCAGGCCCACCA
Downstream region at tRNA end position
cttatattcc
Secondary structure (Cloverleaf model)
>At1090	Pro	TGG
                   t      ACCA cttatattcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     G G G T C     A
    C C G A        G      | | | | |     G
  T         T G G G       C C C A G     C
  G           | | +                 T T
  G         T C C T
    T C A          T     AAAC
                    T + G
                    G + T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTGTGGGGTAGCCTGGTCATCCTTTGGGATTTGGGATCCTGAAACCCCAGTTCGAA
TCTGGGCAGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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