The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1100
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 1683694
End posion on genome 1683767
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ttatgcacat
tRNA gene sequence 
GCCCTCATGGGGTAGGTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGGGGGCGttt
Downstream region at tRNA end position 
ttcagactgt
Secondary structure (Cloverleaf model)
>At1100	Arg	GCG
                   t      Gttt ttcagactgt
                     G - C
                     C - G
                     C - G
                     C - G
                     T + G
                     C - G
                     A - T          T A
                    T     A G C C C     A
    T G G A        G      | | | | |     A
  A         T G G G       T C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          C     GGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTCATGGGGTAGGTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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