The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1101
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 66295
End posion on genome 66209
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
acaagtgcga
tRNA gene sequence 
GCAGAGGTGGTTGAGCTTGGCCAAAGGCGCCGGACTTGAAATCCGGTTCTCCACTGGGGA
GCGGGGGTTCAAATCCCTCCCTCTGCGttt
Downstream region at tRNA end position 
ttaatttcac
Secondary structure (Cloverleaf model)
>At1101	Ser	TGA
                   a      Gttt ttaatttcac
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    T C G A        G      | + | | |     A
  T         G T T G       G G G G G     C
  G           + + |                 T T
  G         A G G C
    C C A A        G     TTCTCCACTGGGGAGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTGGTTGAGCTTGGCCAAAGGCGCCGGACTTGAAATCCGGTTCTCCACTGGGGA
GCGGGGGTTCAAATCCCTCCCTCTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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