The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1102
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 326141
End posion on genome 326068
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
aagctggatt
tRNA gene sequence 
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCAcct
Downstream region at tRNA end position 
agtttatttt
Secondary structure (Cloverleaf model)
>At1102	Ala	GGC
                   t      Acct agtttatttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | +                 T T
    G       G A G T
      G G A        G     AAGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       A
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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