The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1103
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 537545
End posion on genome 537473
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ctttgaacgt
tRNA gene sequence 
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCActt
Downstream region at tRNA end position 
tttattttgg
Secondary structure (Cloverleaf model)
>At1103	Gly	TCC
                   t      Actt tttattttgg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TAAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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